IMMUNE OSby Allerim

Tissue immunology atlas

Tissues as immune ecosystems

Browse barrier systems, resident cells, microbiome interactions, neuroimmune inputs, cytokine environments, and metabolic constraints.

Gut Immune Ecosystem

tissue

Tolerance-dominant barrier system shaped by microbiome metabolites, epithelial alarmins, and antigen flux

barriermicrobiometoleranceTH17

Lung Immune Ecosystem

tissue

Air-exposed barrier where epithelial alarmins, macrophage tone, and type 2 circuits regulate airway reactivity

airwayallergyviral defensealarmins

Brain and CNS Immune Ecosystem

tissue

Privileged but responsive neuroimmune compartment governed by microglia, barriers, and sickness signaling

microglianeuroinflammationbarriersickness behavior

Skin Immune Ecosystem

tissue

Neurovascular barrier where keratinocytes, mast cells, sensory nerves, and resident memory cells shape itch and repair

barrieritchresident memoryalarmins

Adipose Immune Ecosystem

tissue

Metabolic immune niche where nutrient excess, hypoxia, macrophages, and fibrosis reshape systemic inflammation

metabolismmacrophagehypoxiainflammaging

Liver Immune Ecosystem

tissue

Portal immune filter balancing gut-derived tolerance, metabolic stress, acute phase response, and fibrosis

portal circulationacute phaseKupffer cellfibrosis

Vascular Immune Ecosystem

tissue

Endothelial interface controlling leukocyte trafficking, thromboinflammation, permeability, and systemic cytokine distribution

endotheliumthromboinflammationtraffickingcomplement

Lymphoid Tissue Immune Ecosystem

tissue

Organized decision architecture for antigen presentation, clonal selection, germinal centers, and memory formation

lymph nodegerminal centermemorypriming

Bone Marrow Immune Ecosystem

tissue

Primary hematopoietic niche where immune supply, plasma-cell survival, trained myeloid output, and inflammatory demand are coupled

hematopoiesisplasma cellstrained immunitymyelopoiesisimmune reserve

Skeletal Osteoimmune Ecosystem

tissue

Bone as an immune-active remodeling organ linking osteoclasts, osteoblasts, marrow niches, inflammation, sex hormones, and mineral metabolism

osteoimmunologybone remodelingosteoclastmarrow nicheendocrine

Spleen Immune Ecosystem

tissue

Blood-filtering immune organ coordinating encapsulated-bacteria defense, red-pulp macrophages, marginal-zone B cells, and systemic inflammatory surveillance

blood filtermarginal zoneencapsulated bacteriamacrophagecomplement

Mucosal Lymphoid Ecosystem

tissue

Tonsils, adenoids, Peyer's patches, and MALT as antigen-sampling hubs for IgA, tolerance, allergy, and barrier memory

MALTtonsilsPeyer's patchesIgAmucosal tolerance

Thymus Immune Ecosystem

tissue

Central tolerance and T-cell education organ where endocrine signals, epithelial niches, and selection thresholds shape the T-cell repertoire

central toleranceT-cell developmentTregimmunosenescenceendocrine

Endocrine Immune Ecosystem

tissue

Hormone-producing organs as immune-modulating tissues linking HPA tone, thyroid signaling, insulin biology, gonadal hormones, and inflammatory thresholds

neuroendocrinehormonesHPA axisthyroidinsulin